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334 entries « 3 of 7 »

2017

101.

Systems-level organization of non-alcoholic fatty liver disease progression network Journal Article

Vinod PK

K Shubham, L anky Vinay, Vinod PK

Molecular BioSystems, 13 , 1898-1911 (2017)

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102.

Design of RF sensor for simultaneous detection of complex permeability and permittivity of unknown sample Journal Article

Tapan Kumar Sau

Pratik Porwal, Syed Azeemuddin, Prabhakar Bhimalapuram, Tapan Kumar Sau

Progress In Electromagnetics Research, 79 , 159-173 (2017)

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103.

Higher order structures involving post transcriptionally modified nucleobases in RNA Journal Article

Abhijit Mitra

SP Preethi, Purshotam Sharma, Abhijit Mitra

RSC advances, 7 , 35694-35703 (2017)

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104.

THE JOURNAL OF CHEMICAL PHYSICS 146 , 214304 (2017) An alternative laser driven photodissociation mechanism of pyrrole via 1 πσ /S 0 conical intersection Journal Article

Harjinder Singh

Nandipati Krishna Reddy, Zhenzhang Lan,Harjinder Singh, Susanta Mahapatra

THE JOURNAL OF CHEMICAL PHYSICS, 146 (21), 1133-1135 (2017)

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105.

Structural landscape of base pairs containing post-transcriptional modifications in RNA Journal Article

Abhijit Mitra

Preethi P Seelam, Purshotam Sharma, Abhijit Mitra

RNA, 23 , 847-859 (2017)

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106.

Direct Determination of Site-specific Noncovalent Interaction Strengths of Proteins from NMR-derived Fast Side Chain Motional Parameters Journal Article

Marimuthu Krishnan

Rajeshwar Tatikonda Rajitha, Marimuthu Krishnan

Journal of Physical Chemistry B, 121 , 5174–5186 (2017)

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107.

Temperature dependence of the stability of ion pair interactions, and its implications on the thermostability of proteins from thermophiles Journal Article

U. Deva Priyakumar

Swetha Bikkina, Agastya P Bhati, Siladitya Padhi, U Deva Priyakumar

Journal of Chemical Sciences, 129 , 405-414 (2017)

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108.

Initial state-specific photodissociation dynamics of pyrrole via 1πσ∗/S0 conical intersection initiated with optimally controlled UV-laser pulses Journal Article

Harjinder Singh

K. R. Nandipati,Arun Kumar Kanakati,Harjinder Singh,Z. Lan, Susanta Mahapatra

THE EUROPEAN PHYSICAL JOURNAL D, 71 (222), 336-339 (2017)

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109.

Reverse Watson-Crick purine-purine base pairs—the Sharp-turn motif and other structural consequences in functional RNAs Journal Article

Abhijit Mitra

Abhinav Mittal, Antarip Halder, Sohini Bhattacharya, Dhananjay Bhattacharyya, Abhijit Mitra

bioRxiv, 098723 (2017)

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110.

Microsecond simulation of human aquaporin 2 reveals structural determinants of water permeability and selectivity Journal Article

U. Deva Priyakumar

Siladitya Padhi, U Deva Priyakumar

Biochimica et Biophysica Acta (BBA)-Biomembranes, 1859 , 10-16 (2017)

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2016

111.

Detection of biotin-streptavidin interaction using RF interdigitated capacitive cavity Journal Article

Tapan Kumar Sau

Pratik Porwal, Azeemuddin Syed, Prabhakar Bhimalapuram, Tapan Kumar Sau

IEEE MTT-S International Microwave and RF Conference, 18 , 2377-9152 (2016)

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112.

Detection of biotin-streptavidin interaction using RF interdigitated capacitive cavity Journal Article

Tapan Kumar Sau

Pratik Porwal, Azeemuddin Syed, Prabhakar Bhimalapuram, Tapan Kumar Sau

IEEE MTT-S International Microwave and RF Conference, 18 , 2377-9152 (2016)

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113.

Urea mimics nucleobases by preserving the helical integrity of B-DNA duplexes via hydrogen bonding and stacking interactions Journal Article

U. Deva Priyakumar

Gorle Suresh, Siladitya Padhi, Indrajit Patil, U Deva Priyakumar

Biochemistry, 55 , 5653–5664 (2016)

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114.

Urea–aromatic stacking and concerted urea transport: conserved mechanisms in urea transporters revealed by molecular dynamics Journal Article

U. Deva Priyakumar

Siladitya Padhi, U Deva Priyakumar

Journal of chemical theory and computation, 12 , 5190-5200 (2016)

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115.

Effects of point mutations on the thermostability of B. subtilis lipase: investigating nonadditivity Journal Article

Abhijit Mitra

Bipin Singh, Gopalakrishnan Bulusu, Abhijit Mitra

Journal of computer-aided molecular design, 30 , 899–916 (2016)

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116.

Regulatory checkpoint remodeling during experimental evolution of flagellar motility Journal Article

Bhaswar Ghosh

Bin Ni, Bhaswar Ghosh, Ferencz S. Pop, Remy Colin, Thomas Heimerl, Victor Sourjik

Cell Report, 18 , 1–12 (2016)

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117.

Sugar Influx Sensing by the Phosphotransferase System of Escherichia coli. Journal Article

Bhaswar Ghosh

Somavanshi R, Bhaswar Ghosh, Sourjik V

PLoS Biol, 14 (8), e2000074. (2016)

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118.

Structure, interaction, and dynamics of Au/Pd bimetallic nanoalloys dispersed in aqueous ethylpyrrolidone, a monomeric moiety of polyvinylpyrrolidone Journal Article

U. Deva Priyakumar

Aditi Gupta, Bundet Boekfa, Hidehiro Sakurai, Masahiro Ehara, U. Deva Priyakumar

The Journal of Physical Chemistry C, 120 , 17454–17464 (2016)

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119.

Observing Ultra‐Small Gold Cluster to Plasmonic Nanoparticle Evolution in a One‐Pot Aqueous Synthesis Journal Article

Tapan kumar Sau

Shweta Bhardwaj, Ramakrishna Itteboina, Tapan kumar Sau

ChemistrySelect, 1 , 3091-3096 (2016)

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120.

Probing compositeness with the CMS eejj & eej data Journal Article

Subhadip Mitra

Tanumoy Mandal, Subhadip Mitra, Satyajit Seth

Physics Letters B, 758 , 219-225 (2016)

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121.

NAPS: Network analysis of protein structures Journal Article

Nita Parekh

Broto Chakrabarty, Nita Parekh

Nucleic acids research, 44 , W375–W382 (2016)

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122.

Ligand-induced stabilization of a duplex-like architecture is crucial for the switching mechanism of the SAM-III riboswitch Journal Article

U. Deva Priyakumar

Gorle Suresh, Harini Srinivasan, Shivani Nanda, U. Deva Priyakumar

Biochemistry, 55 , 3349–3360 (2016)

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123.

Cooperation of hydrophobic gating, knock-on effect, and ion binding determines ion selectivity in the p7 channel Journal Article

U. Deva Priyakumar

Siladitya Padhi, U. Deva Priyakumar

The Journal of Physical Chemistry B, 120 , 4351–4356 (2016)

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124.

Dynamic ligand-based pharmacophore modeling and virtual screening to identify mycobacterial cyclopropane synthase inhibitors Journal Article

U. Deva Priyakumar

Chinmayee Choudhury, U. Deva Priyakumar, G Narahari Sastry

Journal of Chemical Sciences, 128 , 719–732 (2016)

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125.

Structural and Functional Diversities of the Hexadecahydro‐1H‐cyclopenta [a] phenanthrene Framework, a Ubiquitous Scaffold in Steroidal Hormones Journal Article

U. Deva Priyakumar

Chinmayee Choudhury, U. Deva Priyakumar, G Narahari Sastry

Molecular Informatics, 35 , 145-157 (2016)

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126.

Ability of density functional theory methods to accurately model the reaction energy pathways of the oxidation of CO on gold cluster: A benchmark study Journal Article

U. Deva Priyakumar

Saumya Gurtu, Sandhya Rai, Masahiro Ehara, U. Deva Priyakumar

Theoretical Chemistry Accounts, 135 , 6693-7512 (2016)

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127.

Copy number variation detection workflow using next generation sequencing data Journal Article

Nita Parekh

Prashanthi Dharanipragada, Nita Parekh

BMC Bioinformatics, 15 , 55-60 (2016)

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128.

Pair production of scalar leptoquarks at the LHC to NLO parton shower accuracy Journal Article

Subhadip Mitra

Tanumoy Mandal, Subhadip Mitra, Satyajit Seth

Physical Review D, 93 , 035018 (2016)

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129.

Non-relativistic matter and dark energy in a quantum conformal model Journal Article

Subhadip Mitra

Gopal Kashyap, Pankaj Jain, Subhadip Mitra

Astroparticle Physics, 75 , 64-71 (2016)

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130.

Molecular Origins of Polymer-Coupled Helical Motion of Ions in a Crystalline Polymer Electrolyte Journal Article

Marimuthu Krishnan

Ramesh Cheerla, Marimuthu Krishnan

Macromolecules, 49 , 700–707 (2016)

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2015

131.

Sumoylation of Sir2 differentially regulates transcriptional silencing in yeast Journal Article

U. Deva Priyakumar

Abdul Hannan, Neethu Maria Abraham, Siddharth Goyal, Imlitoshi Jamir, U. Deva Priyakumar, Krishnaveni Mishra

Nucleic acids research, 43 , 10213–10226 (2015)

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132.

Modeling the structure of SARS 3a transmembrane protein using a minimum unfavorable contact approach Journal Article

U. Deva Priyakumar

S Ramakrishna, Siladitya Padhi, U. Deva Priyakumar

Journal of Chemical Sciences, 127 , 2159-2169 (2015)

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133.

The fine tuning of the cosmological constant in a conformal model Journal Article

Subhadip Mitra

Pankaj Jain, Gopal Kashyap, Subhadip Mitra

International Journal of Modern Physics A, 30 , 1550171 (2015)

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134.

On a boundary-localized Higgs boson in 5D theories Journal Article

Subhadip Mitra

Roberto Barceló, Subhadip Mitra, Grégory Moreau

The European Physical Journal C, 75 , 527 (2015)

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135.

ELKO fermions as dark matter candidates Journal Article

Subhadip Mitra

Bakul Agarwal, Pankaj Jain, Subhadip Mitra, Alekha C Nayak, Ravindra K Verma

Physical Review D, 92 , 075027 (2015)

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136.

Molecular dynamics study of the structure, flexibility, and hydrophilicity of PETIM dendrimers: a comparison with PAMAM dendrimers Journal Article

U. Deva Priyakumar

Subbarao Kanchi, Gorle Suresh, U. Deva Priyakumar, KG Ayappa, Prabal K Maiti

The Journal of Physical Chemistry B, 119 , 12990–13001 (2015)

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137.

Supercritical Carbon Dioxide at Smectite Mineral-Water Interfaces: Molecular Dynamics and Adaptive Biasing Force Investigation of CO2/H2O Mixtures Nanoconfined in Na … Journal Article

Marimuthu Krishnan

Mohan Maruthi Sena, Christin P. Morrow, R. James James Kirkpatrick, Marimuthu Krishnan

Chemistry of Materials, 27 , 6946–6959 (2015)

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138.

Robustness of Chimera States in Non-locally Coupled Logistic Maps Journal Article

Nita Parekh

B Pranneetha, Nita Parekh

The Chaotic Modeling and Simulation Journal, 2 , 012217 (2015)

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139.

The role of N7 protonation of guanine in determining the structure, stability and function of RNA base pairs Journal Article

Abhijit Mitra

Antarip Halder, Sohini Bhattacharya, Ayan Datta, Dhananjay Bhattacharyya, Abhijit Mitra

Physical Chemistry Chemical Physics, 17 , 26249-26263 (2015)

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140.

Inclusion of methoxy groups inverts the thermodynamic stabilities of DNA–RNA hybrid duplexes: A molecular dynamics simulation study Journal Article

U. Deva Priyakumar

Gorle Suresh, U. Deva Priyakumar

Journal of Molecular Graphics and Modelling, 61 , 150-159 (2015)

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141.

Nucleobases tagged to gold nanoclusters cause a mechanistic crossover in the oxidation of CO Journal Article

U. Deva Priyakumar

Sandhya Rai, Masahiro Ehara, U. Deva Priyakumar

Physical Chemistry Chemical Physics, 17 , 24275-24281 (2015)

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142.

Double zipper helical assembly of deoxyoligonucleotides: mutual templating and chiral imprinting to form hybrid DNA ensembles Journal Article

U. Deva Priyakumar

Nagarjun Narayanaswamy, Gorle Suresh, U. Deva Priyakumar, T Govindaraju

Chemical Communications, 51 , 5493-5496 (2015)

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143.

Functional characterization of drought-responsive modules and genes in Oryza sativa: a network-based approach Journal Article

Nita Parekh

Sanchari Sircar, Nita Parekh

Frontiers in genetics, 6 , 3389 (2015)

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144.

Structure, Energetics, and Dynamics of Supercritical Carbon Dioxide at Smectite Mineral-Water Interfaces: Molecular Dynamics Modeling and Adaptive Force Investigation of CO2 … Journal Article

Marimuthu Krishnan

MM Sena, CP Morrow, RJ Kirkpatrick, Marimuthu Krishnan

Chem. Mater, 27 , 2256-3100 (2015)

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145.

NMR and computational molecular modeling studies of mineral surfaces and interlayer galleries: A review Journal Article

Marimuthu Krishnan

R James Kirkpatrick, Andrey G Kalinichev, Geoffrey M Bowers, A Özgür Yazaydin, Marimuthu Krishnan, Moumita Saharay, Christin P Morrow

American Mineralogist, 100 , 1341–1354 (2015)

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146.

Single productions of colored particles at the LHC: an example with scalar leptoquarks Journal Article

Subhadip Mitra

Tanumoy Mandal, Subhadip Mitra, Satyajit Seth

Journal of High Energy Physics, 28 , 2256-2262 (2015)

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147.

BREATH ACETONE-BASED NON-INVASIVE DETECTION OF BLOOD GLUCOSE LEVELS Journal Article

Tapan Kumar Sau

Anand Thati, Arunangshu Biswas, Shubhajit Roy Chowdhury, Tapan Kumar Sau

INTERNATIONAL JOURNAL ON SMART SENSING AND INTELLIGENT SYSTEMS, 8 , 665-721 (2015)

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148.

Ion hydration dynamics in conjunction with a hydrophobic gating mechanism regulates ion permeation in p7 viroporin from hepatitis C virus Journal Article

U. Deva Priyakumar

Siladitya Padhi, U. Deva Priyakumar

The Journal of Physical Chemistry B, 119 , 6204–6210 (2015)

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149.

Binding to gold nanoclusters alters the hydrogen bonding interactions and electronic properties of canonical and size-expanded DNA base pairs Journal Article

U. Deva Priyakumar

Sandhya Rai, Harjinder Singh, U. Deva Priyakumar

RSC Advances, 5 , 49408-49419 (2015)

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150.

Small-molecule inhibitors of ERK-mediated immediate early gene expression and proliferation of melanoma cells expressing mutated BRaf Journal Article

U. Deva Priyakumar

Ramin Samadani, Jun Zhang, Amanda Brophy, Taiji Oashi, U. Deva Priyakumar, E Prabhu Raman, Franz J St John, Kwan-Young Jung, Steven Fletcher, Edwin Pozharski, Alexander D MacKerell Jr, Paul Shapiro

Biochemical Journal, 467 , 425–438 (2015)

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334 entries « 3 of 7 »