Publications

343 entries « 1 of 7 »

2021

1.

A minimal model for synaptic integration in simple neurons Journal Article

Harjinder Singh

Adrian Alva, Harjinder Singh

Physica D: Nonlinear Phenomena, 426 , 132988 (2021)

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2.

Machine Learning Approaches in Detection and Diagnosis of Covid-19 Journal Article

Nita Parekh

Suba S and Nita Parekh

(2021)

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3.

BiRDS - Binding Residue Detection from Protein Sequences using Deep ResNets Journal Article

U. Deva Priyakumar

Chelur Vineeth, Priyakumar UD

ChemRxiv., (2021)

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4.

Improving third-generation leptoquark searches with combined signals and boosted top Journal Article

Subhadip Mitra

Arvind Bhaskar, Tanumoy Mandal, Subhadip Mitra ,Mohit Sharma

arXiv, (2021)

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5.

SCONES: Self-Consistent Neural Network for Protein Stability Prediction Upon Mutation Journal Article

U. Deva Priyakumar

Yashas Samaga B L ,Shampa Raghunathan ,U. Deva Priyakumar

ChemRxiv., (2021)

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6.

DART: Deep Learning Enabled Topological Interaction Model for Energy Prediction of Metal Clusters and its Application in Identifying Unique Low Energy Isomers Journal Article

U. Deva Priyakumar

Rohit Modee ,Sheena Agarwal ,Ashwini Verma ,Kavita Joshi ,U. Deva Priyakumar

ChemRxiv., (2021)

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7.

MMBERT: Multimodal BERT Pretraining for Improved Medical VQA Journal Article

U. Deva Priyakumar

Yash Khare, Viraj Bagal, Minesh Mathew, Adithi Devi, U Deva Priyakumar, CV Jawahar

IEEE 18th International Symposium on Biomedical Imaging (ISBI), 1033-1036 (2021)

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8.

Exploring Genetic-histologic Relationships in Breast Cancer Journal Article

Vinod PK

Ruchi Chauhan; PK Vinod; CV Jawahar

IEEE 18th International Symposium on Biomedical Imaging (ISBI), 1187-1190 (2021)

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9.

Multiscale Modeling of Wobble to Watson–Crick-Like Guanine–Uracil Tautomerization Pathways in RNA Journal Article

U. Deva Priyakumar

Shreya Chandorkar, Shampa Raghunathan ,Tanashree Jaganade and U. Deva Priyakumar

International Journal of Molecular Sciences, 22 (11), 5411 (2021)

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10.

DeepPocket: Ligand Binding Site Detection and Segmentation using 3D Convolutional Neural Networks Journal Article

U. Deva Priyakumar

Rishal Aggarwal ,Akash Gupta ,Vineeth Chelur ,C. V. Jawahar ,U. Deva Priyakumar

ChemRxiv., (2021)

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11.

LHC Bounds on RD(∗) motivated Leptoquark Models Journal Article

Subhadip Mitra

Arvind Bhaskar, Tanumoy Mandal, Subhadip Mitra, Cyrin Neeraj, Swapnil Raz

arXiv, (2021)

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12.

Machine learning based clinical decision support system for early COVID-19 mortality prediction Journal Article

U. Deva Priyakumar

Akshaya Karthikeyan, Akshit Garg, PK Vinod, U Deva Priyakumar

Frontiers in Public Health, 2021 (9), 626697 (2021)

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13.

LigGPT: Molecular Generation using a Transformer-Decoder Model Journal Article

U. Deva Priyakumar

Viraj Bagal ,Rishal Aggarwal ,P. K. Vinod ,U. Deva Priyakumar

ChemRxiv., (2021)

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14.

Cancellation in dark matter-nucleon interactions: The role of non-standard-model-like Yukawa couplings Journal Article

Subhadip Mitra

Debottam Das, Bibhabasu De, Subhadip Mitra

Physics Letters B, 815 , 136159 (2021), ISSN: 0370-2693,

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15.

Enhanced Sampling of Chemical Space for High Throughput Screening Applications using Machine Learning Journal Article

U. Deva Priyakumar

Sarvesh Mehta ,Siddhartha Laghuvarapu ,Yashaswi Pathak ,Aaftaab Sethi ,Mallika Alvala ,U. Deva Priyakumar

ChemRxiv., (2021)

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16.

MEMES: Machine learning framework for Enhanced MolEcular Screening Journal Article

U. Deva Priyakumar

Sarvesh Mehta ,Siddhartha Laghuvarapu ,Yashaswi Pathak ,Aaftaab Sethi ,Mallika Alvala ,U. Deva Priyakumar

ChemRxiv., (2021)

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17.

DbStRiPs: Database of structural repeats in proteins Journal Article

Nita Parekh

Broto Chakrabarty, Nita Parekh

Protein Science, 1-14 (2021)

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18.

Precise limits on the charge-2/3 U1 vector leptoquark Journal Article

Subhadip Mitra

Arvind Bhaskar, Diganta Das, Tanumoy Mandal, Subhadip Mitra, Cyrin Neeraj

arXiv, (2021)

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19.

Learning Atomic Interactions through Solvation Free Energy Prediction Using Graph Neural Networks Journal Article

U. Deva Priyakumar

Yashaswi Pathak, Sarvesh Mehta, and U. Deva Priyakumar

Journal of Chemical Information and Modeling, 61 (2), 689-698 (2021)

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20.

Applications of Machine Learning Algorithms to Cancer Data Book

Nita Parekh

Suba S and Nita Parekh

(2021)

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2020

21.

Allosteric Response of DNA Recognition Helices of Catabolite Activator Protein to cAMP and DNA Binding Journal Article

Marimuthu Krishnan

Akshay Prabhakant, Abhinandan Panigrahi, Marimuthu Krishnan

Journal of Chemical Information and Modeling, 60 (12), 6366-6376 (2020)

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22.

Enhancing scalar productions with leptoquarks at the Large Hadron Collider(LHC) at CERN Journal Article

Subhadip Mitra

Arvind Bhaskar, Debottam Das, Bibhabasu De, Subhadip Mitra

Physical Review D102,035002, 15 (2020)

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23.

Machine learning for accurate force calculations in molecular dynamics simulations Journal Article

U. Deva Priyakumar

Punyaslok Pattnaik, Shampa Raghunathan, Tarun Kalluri, Prabhakar Bhimalapuram, C. V. Jawahar, and U. Deva Priyakumar

J. Phys. Chem. A, 124 , 6954–6967 (2020)

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24.

Modeling the control of meiotic cell divisions: Entry, Progression, and Exit Journal Article

Vinod PK

Prakrati Dangarh, Nishtha Pandey, Vinod PK

Biophysical Journal, 119 , 1015-1024 (2020)

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25.

Design of a MAPK signalling cascade balances energetic cost versus accuracy of information transmission. Journal Article

Bhaswar Ghosh

Anders, A., Bhaswar Ghosh., Glatter, T, Sourjik V

Nature Communications , 11 (1), 3494 (2020)

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26.

PRIGSA2: Improved version of Protein Repeat Identification by Graph Spectral Analysis Journal Article

Nita Parekh

Broto Chakrabarty, Nita Parekh

Journal of Biosciences, 45 , 16 (2020)

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27.

Quantitative modeling and analysis show country-specific optimization of quarantine measures can potentially circumvent COVID19 infection spread post lockdown Journal Article

Bhaswar Ghosh

Uddipan Sarma,Bhaswar Ghosh

MedRxiv, 20107169 (2020)

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28.

Deep Learning Enabled Inorganic Material Generator Journal Article

U. Deva Priyakumar

Yashaswi Pathak, Karandeep Singh Juneja, Girish Varma, Masahiro Ehara, U Deva Priyakumar

Physical Chemistry Chemical Physics, 22 , 26935-26943 (2020)

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29.

Urea-water solvation of protein side chain models Journal Article

U. Deva Priyakumar

Tanashree Jaganade, Aditya Chattopadhyay, Shampa Raghunathan, U. Deva Priyakumar

Journal of Molecular Liquids, 311 , 113191 (2020)

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30.

Network-based metabolic characterization of renal cell carcinoma Journal Article

Vinod PK

Nishtha Pandey, Vinay Lanke, PK Vinod

Scientific reports, 10 , 1-13 (2020)

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31.

Chemically interpretable graph interaction network for prediction of pharmacokinetic properties of drug-like molecules Journal Article

U. Deva Priyakumar

Yashaswi Pathak, Siddhartha Laghuvarapu, Sarvesh Mehta, U. Deva Priyakumar

Proceedings of the AAAI Conference on Artificial Intelligence, 34 , 873-880 (2020)

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32.

Boosting vector leptoquark searches with boosted tops Journal Article

Subhadip Mitra

Arvind Bhaskar, Tanumoy Mandal, Subhadip Mitra

Physical Review D 101, 115015, (2020)

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33.

Band nn: A deep learning framework for energy prediction and geometry optimization of organic small molecules Journal Article

U. Deva Priyakumar

Siddhartha Laghuvarapu, Yashaswi Pathak, U Deva Priyakumar

Journal of Computational Chemistry, 41 , 790-799 (2020)

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34.

Sequence specificity, energetics and mechanism of mismatch recognition by DNA damage sensing protein Rad4/XPC Journal Article

Marimuthu Krishnan

Abhinandan Panigrahi, Hemanth Vemuri, Madhur Aggarwal, Kartheek Pitta, Marimuthu Krishnan

Nucleic Acids Research, 48 (5), 2246–2257 (2020)

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35.

Integrative analysis of DNA methylation and gene expression in papillary renal cell carcinoma Authors Journal Article

Vinod PK

Noor Pratap Singh , Vinod PK

Molecular Genetics and Genomics, 295 , 807–824 (2020)

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36.

Identification of co-expression gene networks controlling rice blast disease during an incompatible reaction. Journal Article

Nita Parekh

R. Bevitori , S. Sircar , R.N. de Mello , R.C. Togawa , M.V.C.B. Côrtes T.S. Oliveira , M.F. Grossi-de-Sá and Nita Parekh

Genetics and molecular research, 19 (3), 23 (2020)

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37.

Network-based Machine Learning Approach for Structural Domain Identification in Proteins Journal Article

Nita Parekh

Anirudh Tiwari and Nita Parekh

bioRxiv, 2 , 960666 (2020)

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38.

Urea-aromatic interactions in biology Journal Article

U. Deva Priyakumar

Shampa Raghunathan, Tanashree Jaganade, U. Deva Priyakumar

Biophysical Reviews, 12 , 65-84 (2020)

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39.

Enantioseparation and chiral induction in Ag 29 nanoclusters with intrinsic chirality Journal Article

U. Deva Priyakumar

Hiroto Yoshida, Masahiro Ehara, U Deva Priyakumar, Tsuyoshi Kawai, Takuya Nakashima

Chemical Science, 11 , 2394-2400 (2020)

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40.

Addressing the R D ( * ) anomalies with an S 1 leptoquark from SO(10) grand unification Journal Article

Subhadip Mitra

Ufuk Aydemir, Tanumoy Mandal, Subhadip Mitra

Physical Review D, 101 , 015011 (2020)

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41.

An APT charge based descriptor for atomic level description of chemical Raman enhancement by adsorption of 4-Mercaptopyridine on semiconducting nanoclusters: A theoretical study Journal Article

Harjinder Singh

N. V. Suresh Kumar,Harjinder Singh

Vibrational spectroscopy, 107 , 103019 (2020)

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42.

The HIV-1 Vpu transmembrane domain topology and formation of a hydrophobic interface with BST-2 are critical for Vpu-mediated BST-2 downregulation Journal Article

U. Deva Priyakumar

Nabab Khan, Siladitya Padhi, Paresh Patel, U Deva Priyakumar, Shahid Jameel

bioRxiv, 10 , 176289 (2020)

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43.

Selectivity and transport in aquaporins from molecular simulation studies Journal Article

U. Deva Priyakumar

Siladitya Padhi, U. Deva Priyakumar

Vitamins and Hormones , 112 , 47-70 (2020)

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44.

Host metabolic reprogramming in response to SARS-Cov-2 infection Journal Article

Vinod PK

STR Moolamalla, Ruchi Chauhan, U Deva Priyakumar, PK Vinod

bioRxiv, 10 , 232645 (2020)

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2019

45.

Genome-wide characterization of copy number variations in diffuse large B-cell lymphoma with implications in targeted therapy Journal Article

Nita Parekh

Prashanthi Dharanipragada, Nita Parekh

Precision Clinical Medicine, 2 , 246–258 (2019)

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46.

Determining P-Wave 45° Laboratory Acoustic Measurement using a Vertically Drilled Plug Journal Article

Abhijit Mitra

Akshay A Thombare, Munir Aldin, Deepak Gokaraju, Andreina Guedez, Sudarshan Govindarajan, Abhijit Mitra

ISRM International Symposium on Geomechanics , 978-981 (2019)

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47.

Recent Advancements in Computing Reliable Binding Free Energies in Drug Discovery Projects Journal Article

U. Deva Priyakumar

N Arul Murugan, Vasanthanathan Poongavanam, U Deva Priyakumar

Structural Bioinformatics: Applications in Preclinical Drug Discovery Process, 27 , 221-246 (2019)

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48.

Multiple system‐level feedback loops control life‐and‐death decisions in endoplasmic reticulum stress Journal Article

Vinod PK

Orsolya Kapuy, Margita Márton, Gábor Bánhegyi, PK Vinod

FEBS letters, 594 , 1112-1123 (2019)

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49.

Hunting for scalar leptoquarks with boosted tops and light leptons Journal Article

Subhadip Mitra

Kushagra Chandak, Tanumoy Mandal, Subhadip Mitra

Physical Review D, 100 , 075019 (2019)

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50.

A Novel Non-Destructive and Rapid Cleaning Method for Intact Ultra-Low Permeability Rocks Journal Article

Abhijit Mitra

Andreina Guedez*, William Mickelson, Samuel Aldin, Deepak Gokaraju, Abhijit Mitra, Akshay Thombare, Robert Patterson, Munir Aldin

Unconventional Resources Technology Conference, Denver, Colorado,, 5455 (2019)

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343 entries « 1 of 7 »