Publications

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313 entries « 1 of 7 »

2021

1.

Machine Learning Approaches in Detection and Diagnosis of Covid-19 Journal Article

Nita Parekh

Suba S and Nita Parekh

(2021)

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2.

Applications of Machine Learning Algorithms to Cancer Data Book

Nita Parekh

Suba S and Nita Parekh

(2021)

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2020

3.

Allosteric Response of DNA Recognition Helices of Catabolite Activator Protein to cAMP and DNA Binding Journal Article

Marimuthu Krishnan

Akshay Prabhakant, Abhinandan Panigrahi, Marimuthu Krishnan

Journal of Chemical Information and Modeling, 60 (12), 6366-6376 (2020)

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4.

Enhancing scalar productions with leptoquarks at the Large Hadron Collider(LHC) at CERN Journal Article

Subhadip Mitra

Arvind Bhaskar, Debottam Das, Bibhabasu De, Subhadip Mitra

Physical Review D102,035002, 15 (2020)

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5.

Machine learning for accurate force calculations in molecular dynamics simulations Journal Article

U. Deva Priyakumar

Punyaslok Pattnaik, Shampa Raghunathan, Tarun Kalluri, Prabhakar Bhimalapuram, C. V. Jawahar, and U. Deva Priyakumar

J. Phys. Chem. A, 124 , 6954–6967 (2020)

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6.

Modeling the control of meiotic cell divisions: Entry, Progression, and Exit Journal Article

Vinod PK

Prakrati Dangarh, Nishtha Pandey, Vinod PK

Biophysical Journal, 119 , 1015-1024 (2020)

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7.

Design of a MAPK signalling cascade balances energetic cost versus accuracy of information transmission. Journal Article

Bhaswar Ghosh

Anders, A., Bhaswar Ghosh., Glatter, T, Sourjik V

Nature Communications , 11 (1), 3494 (2020)

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8.

PRIGSA2: Improved version of Protein Repeat Identification by Graph Spectral Analysis Journal Article

Nita Parekh

Broto Chakrabarty, Nita Parekh

Journal of Biosciences, 45 , 16 (2020)

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9.

Quantitative modeling and analysis show country-specific optimization of quarantine measures can potentially circumvent COVID19 infection spread post lockdown Journal Article

Bhaswar Ghosh

Uddipan Sarma,Bhaswar Ghosh

MedRxiv, 20107169 (2020)

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10.

Deep Learning Enabled Inorganic Material Generator Journal Article

U. Deva Priyakumar

Yashaswi Pathak, Karandeep Singh Juneja, Girish Varma, Masahiro Ehara, U Deva Priyakumar

Physical Chemistry Chemical Physics, 22 , 26935-26943 (2020)

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11.

Urea-water solvation of protein side chain models Journal Article

U. Deva Priyakumar

Tanashree Jaganade, Aditya Chattopadhyay, Shampa Raghunathan, U. Deva Priyakumar

Journal of Molecular Liquids, 311 , 113191 (2020)

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12.

Network-based metabolic characterization of renal cell carcinoma Journal Article

Vinod PK

Nishtha Pandey, Vinay Lanke, PK Vinod

Scientific reports, 10 , 1-13 (2020)

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13.

Chemically interpretable graph interaction network for prediction of pharmacokinetic properties of drug-like molecules Journal Article

U. Deva Priyakumar

Yashaswi Pathak, Siddhartha Laghuvarapu, Sarvesh Mehta, U. Deva Priyakumar

Proceedings of the AAAI Conference on Artificial Intelligence, 34 , 873-880 (2020)

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14.

Boosting vector leptoquark searches with boosted tops Journal Article

Subhadip Mitra

Arvind Bhaskar, Tanumoy Mandal, Subhadip Mitra

Physical Review D 101, 115015, (2020)

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15.

Band nn: A deep learning framework for energy prediction and geometry optimization of organic small molecules Journal Article

U. Deva Priyakumar

Siddhartha Laghuvarapu, Yashaswi Pathak, U Deva Priyakumar

Journal of Computational Chemistry, 41 , 790-799 (2020)

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16.

Sequence specificity, energetics and mechanism of mismatch recognition by DNA damage sensing protein Rad4/XPC Journal Article

Marimuthu Krishnan

Abhinandan Panigrahi, Hemanth Vemuri, Madhur Aggarwal, Kartheek Pitta, Marimuthu Krishnan

Nucleic Acids Research, 48 (5), 2246–2257 (2020)

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17.

Integrative analysis of DNA methylation and gene expression in papillary renal cell carcinoma Authors Journal Article

Vinod PK

Noor Pratap Singh , Vinod PK

Molecular Genetics and Genomics, 295 , 807–824 (2020)

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18.

Identification of co-expression gene networks controlling rice blast disease during an incompatible reaction. Journal Article

Nita Parekh

R. Bevitori , S. Sircar , R.N. de Mello , R.C. Togawa , M.V.C.B. Côrtes T.S. Oliveira , M.F. Grossi-de-Sá and Nita Parekh

Genetics and molecular research, 19 (3), 23 (2020)

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19.

Network-based Machine Learning Approach for Structural Domain Identification in Proteins Journal Article

Nita Parekh

Anirudh Tiwari and Nita Parekh

bioRxiv, 2 , 960666 (2020)

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20.

Urea-aromatic interactions in biology Journal Article

U. Deva Priyakumar

Shampa Raghunathan, Tanashree Jaganade, U. Deva Priyakumar

Biophysical Reviews, 12 , 65-84 (2020)

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21.

Enantioseparation and chiral induction in Ag 29 nanoclusters with intrinsic chirality Journal Article

U. Deva Priyakumar

Hiroto Yoshida, Masahiro Ehara, U Deva Priyakumar, Tsuyoshi Kawai, Takuya Nakashima

Chemical Science, 11 , 2394-2400 (2020)

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22.

Addressing the R D ( * ) anomalies with an S 1 leptoquark from SO(10) grand unification Journal Article

Subhadip Mitra

Ufuk Aydemir, Tanumoy Mandal, Subhadip Mitra

Physical Review D, 101 , 015011 (2020)

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23.

The HIV-1 Vpu transmembrane domain topology and formation of a hydrophobic interface with BST-2 are critical for Vpu-mediated BST-2 downregulation Journal Article

U. Deva Priyakumar

Nabab Khan, Siladitya Padhi, Paresh Patel, U Deva Priyakumar, Shahid Jameel

bioRxiv, 10 , 176289 (2020)

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24.

Selectivity and transport in aquaporins from molecular simulation studies Journal Article

U. Deva Priyakumar

Siladitya Padhi, U. Deva Priyakumar

Vitamins and Hormones , 112 , 47-70 (2020)

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25.

Machine learning based clinical decision support system for early COVID-19 mortality prediction Journal Article

U. Deva Priyakumar

Akshaya Karthikeyan, Akshit Garg, PK Vinod, U Deva Priyakumar

medRxiv, 10 , 20177477 (2020)

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26.

Host metabolic reprogramming in response to SARS-Cov-2 infection Journal Article

Vinod PK

STR Moolamalla, Ruchi Chauhan, U Deva Priyakumar, PK Vinod

bioRxiv, 10 , 232645 (2020)

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2019

27.

Genome-wide characterization of copy number variations in diffuse large B-cell lymphoma with implications in targeted therapy Journal Article

Nita Parekh

Prashanthi Dharanipragada, Nita Parekh

Precision Clinical Medicine, 2 , 246–258 (2019)

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28.

Determining P-Wave 45° Laboratory Acoustic Measurement using a Vertically Drilled Plug Journal Article

Abhijit Mitra

Akshay A Thombare, Munir Aldin, Deepak Gokaraju, Andreina Guedez, Sudarshan Govindarajan, Abhijit Mitra

ISRM International Symposium on Geomechanics , 978-981 (2019)

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29.

Recent Advancements in Computing Reliable Binding Free Energies in Drug Discovery Projects Journal Article

U. Deva Priyakumar

N Arul Murugan, Vasanthanathan Poongavanam, U Deva Priyakumar

Structural Bioinformatics: Applications in Preclinical Drug Discovery Process, 27 , 221-246 (2019)

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30.

Multiple system‐level feedback loops control life‐and‐death decisions in endoplasmic reticulum stress Journal Article

Vinod PK

Orsolya Kapuy, Margita Márton, Gábor Bánhegyi, PK Vinod

FEBS letters, 594 , 1112-1123 (2019)

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31.

Hunting for scalar leptoquarks with boosted tops and light leptons Journal Article

Subhadip Mitra

Kushagra Chandak, Tanumoy Mandal, Subhadip Mitra

Physical Review D, 100 , 075019 (2019)

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32.

A Novel Non-Destructive and Rapid Cleaning Method for Intact Ultra-Low Permeability Rocks Journal Article

Abhijit Mitra

Andreina Guedez*, William Mickelson, Samuel Aldin, Deepak Gokaraju, Abhijit Mitra, Akshay Thombare, Robert Patterson, Munir Aldin

Unconventional Resources Technology Conference, Denver, Colorado,, 5455 (2019)

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33.

An Experimental Investigation of the Anisotropic Dynamic and Static Properties of Eagle Ford Shales Journal Article

Abhijit Mitra

Yang Wang*, De-Hua Han, Luanxiao Zhao, Abhijit Mitra, Samir Aldin

Unconventional Resources Technology Conference, Denver, Colorado, 5455 (2019)

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34.

Identifying Biomarkers for Diffuse Large B-Cell Lymphoma Subtypes Journal Article

Nita Parekh

Prashanthi Dharanipragada, Nita Parekh

Novel Approaches in Cancer Study, 2 , 637-773 (2019)

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35.

Controlled intramolecular H-transfer in Malonaldehyde in the electronic ground state mediated through the conical intersection of 1nπ* and 1ππ* excited electronic states Journal Article

Harjinder Singh

K. R. Nandipati,Arun Kumar Kanakati,Harjinder Singh, Susanta Mahapatra

Physical Chemistry Chemical Physics, 21 , 20018-20030 (2019)

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36.

Comparative Study Of The Efficiency Of Au, Ag, Pd And Pt Based Mono And Bimetallic Trimer Clusters For The CO Oxidation Reaction Journal Article

U. Deva Priyakumar

Saumya Gurtu,Sandhya Rai, U. Deva Priyakumar

Indian chemical society, 96 , 921-931 (2019)

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37.

Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images using deep learning Journal Article

Vinod PK

Sairam Tabibu, Vinod PK, CV Jawahar

Scientific reports, 9 , 9 (2019)

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38.

Cholic Acid-Derived Amphiphile which Combats Gram-Positive Bacteria-Mediated Infections via Disintegration of Lipid Clusters Journal Article

U. Deva Priyakumar

Sandeep Kumar, Jyoti Thakur, Kavita Yadav, Madhurima Mitra, Sanjay Pal, Arjun Ray, Siddhi Gupta, Nihal Medatwal, Ragini Gupta, Deepakkumar Mishra, Parul Rani, Siladitya Padhi, Priyanka Sharma, Arti Kapil, Aasheesh Srivastava, U Deva Priyakumar, Ujjaini Dasgupta, Lipi Thukral, Avinash Bajaj

ACS Biomaterials Science & Engineering, 5 , 4764–4775 (2019)

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39.

Comparative study of the efficiency of Au, Ag, Pd and Pt based mono and bimetallic trimer clusters for the CO oxidation reaction Journal Article

U. Deva Priyakumar

Saumya Gurtu, Sandhya Rai, U Deva Priyakumar

JOURNAL OF THE INDIAN CHEMICAL SOCIETY, 96 , 10 (2019)

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40.

NAPS update: network analysis of molecular dynamics data and protein–nucleic acid complexes Journal Article

Nita Parekh

Broto Chakrabarty, Varun Naganathan, Kanak Garg, Yash Agarwal, Nita Parekh

Nucleic acids research, 47 , W462–W470 (2019)

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41.

Utilization of sidewall plugs for enhancing rock characterization Journal Article

Abhijit Mitra

R. Patterson and M. Aldin S. Govindarajan, D. Gokaraju, Abhijit Mitra, A. Thombare, A. Guedez, T. Ghoneim

One petro, 2019-2103 (2019)

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42.

Energetic, structural and dynamic properties of nucleobase-urea interactions that aid in urea assisted RNA unfolding Journal Article

U. Deva Priyakumar

Tanashree Jaganade, Aditya Chattopadhyay, Nila M Pazhayam, U Deva Priyakumar

Scientific reports, 9 , 12 (2019)

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43.

Single-cell transcriptomic analysis of pancreatic islets in health and type 2 diabetes Journal Article

Vinod PK

Shubham Kumar, Vinod PK

International Journal of Advances in Engineering Sciences and Applied Mathematics, 11 , 105–118 (2019)

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44.

Gold‐Palladium Nanocluster Catalysts for Homocoupling: Electronic Structure and Interface Dynamics Journal Article

U. Deva Priyakumar

Masahiro Ehara, U Deva Priyakumar

The Chemical Record, 19 , 947-959 (2019)

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45.

Meta-analysis of drought-tolerant genotypes in Oryza sativa: A network-based approach Journal Article

Nita Parekh

Sanchari Sircar, Nita Parekh

PloS one, 14 , e0216068 (2019)

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46.

Classical Racemization of Tetrahedral Tetracoordinate Centers via a Planar Transition State or an Intermediate Structure Journal Article

U. Deva Priyakumar

Shampa Raghunathan, Komal Yadav, VC Rojisha, Tanashree Jaganade, V Prathyusha, Swetha Bikkina, Upakarasamy Lourderaj, U Deva Priya Kumar

ChemRxiv, 7114-3955 (2019)

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47.

Computational modeling of the catalytic mechanism of hydroxymethylbilane synthase Journal Article

U. Deva Priyakumar

Navneet Bung, Arijit Roy, U Deva Priyakumar, Gopalakrishnan Bulusu

Physical Chemistry Chemical Physics, 21 , 7932-7940 (2019)

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48.

R D ( * ) motivated S 1 leptoquark scenarios: Impact of interference on the exclusion limits from LHC data Journal Article

Subhadip Mitra

Tanumoy Mandal, Subhadip Mitra, Swapnil Raz

Physical Review D, 99 , 055028 (2019)

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49.

Atypical flexibility in dynamic functional connectivity quantifies the severity in autism spectrum disorder Journal Article

Vinod PK

Vatika Harlalka, Raju S Bapi, PK Vinod, Dipanjan Roy

Frontiers in human neuroscience, 13 , 6 (2019)

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50.

Sol-gel synthesis and characterizations of morphology-controlled Co3O4 particles Journal Article

Tapan Kumar Sau

Ramakrishna Itteboina, Tapan Kumar sau

Materials Today: Proceedings, 9 , 458-467 (2019)

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313 entries « 1 of 7 »