Publications

347 entries « 6 of 7 »

2010

251.

Design of an infrared laser pulse to control the multiphoton dissociation of the Fe-CO bond in CO-heme compounds Journal Article

Harjinder Singh

Sitansh Sharma,Harjinder Singh,Jeremy N Harvey,Gabriel G Balint-Kurti

Chmeical Physics, 133 (17), 103-113 (2010)

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252.

Corrigendum to “Comparative modeling of thioredoxin glutathione reductase from Schistosoma mansoni: a multifunctional target for antischistosomial drug discovery”[J. Mol. Graph … Journal Article

Abhijit Mitra

Monika Sharma, Smriti Khanna, Gopalakrishnan Bulusu, Abhijit Mitra

Journal of Molecular Graphics and Modelling, 29 , 506 (2010)

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253.

Atomistic Details of the Ligand Discrimination Mechanism of SMK/SAM-III Riboswitch Journal Article

U. Deva Priyakumar

U. Deva Priyakumar

The Journal of Physical Chemistry B, 114 , 9920–9925 (2010)

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254.

Controlling Dynamical Networks Conference

Nita Parekh

Raina Arora, Nita Parekh

The 3rd Chaotic Modeling and Simulation International Conference (CHAOS2010) (2010).

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255.

Method for manufacture of noble metal alloy catalysts and catalysts prepared therewith Patent

Tapan Kumar Sau

Dan V Goia, Marco Lopez, Tapan Kumar Sau, Mihaela-Ortansa Jitianu

7713910, (2010).

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256.

On the role of Hoogsteen: Hoogsteen interactions in RNA: ab initio investigations of structures and energies Journal Article

Abhijit Mitra

Purshotam Sharma, Mohit Chawla, Sitansh Sharma, Abhijit Mitra

RNA, 16 , 942-957 (2010)

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257.

Model for how retrograde actin flow regulates adhesion traction stresses Journal Article

Prabhakar Bhimalapuram

Ying Li, Prabhakar Bhimalapuram, Aaron R Dinner

Journal of Physics: Condensed Matter, 22 , 194113 (2010)

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258.

Noble Metal Nanoparticles:(Adv. Mater. 16/2010) Journal Article

Tapan Kumar Sau

Tapan Kumar Sau, Andrey L Rogach

Advanced Materials, 22 , (2010)

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259.

Properties and applications of colloidal nonspherical noble metal nanoparticles Journal Article

Tapan Kumar Sau

Tapan Kumar Sau, Andrey L Rogach, Frank Jäckel, Thomas A Klar, Jochen Feldmann

Advanced Materials, 22 , 1805-1825 (2010)

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260.

Nonspherical noble metal nanoparticles: colloid‐chemical synthesis and morphology control Journal Article

Tapan Kumar Sau

Tapan Kuamr Sau, Andrey L Rogach

Advanced Materials, 22 , 1781-1804 (2010)

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261.

Temperature dependence of protein dynamics simulated with three different water models Journal Article

Marimuthu Krishnan

Dennis C Glass, Marimuthu Krishnan, David R Nutt, Jeremy C Smith

Journal of Chemical Theory and Computation, 6 , 1390-1400 (2010)

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262.

Role of the adenine ligand on the stabilization of the secondary and tertiary interactions in the adenine riboswitch Journal Article

U. Deva Priyakumar

U. Deva Priyakumar, Alexander D MacKerell Jr

Journal of Molecular Biology, 396 , 1422-1438 (2010)

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263.

On the Role of the cis Hoogsteen: Sugar-Edge Family of Base Pairs in Platforms and Triplets - Quantum Chemical Insights into RNA Structural Biology Journal Article

Abhijit Mitra

Purshotam Sharma, Judit E Šponer, Jiří Šponer, Sitansh Sharma, Dhananjay Bhattacharyya, Abhijit Mitra

The Journal of Physical Chemistry B, 114 , 3307–3320 (2010)

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264.

Genetic algorithm optimization of laser pulses for molecular quantum state excitation Journal Article

Harjinder Singh

Sitansh Sharma,Harjinder Singh,Gabriel Balint-Kurti

J. Chem. Phys, 132 , 64108 (2010)

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265.

Structural and energetic determinants of thermal stability and hierarchical unfolding pathways of hyperthermophilic proteins, Sac7d and Sso7d Journal Article

U. Deva Priyakumar

U. Deva Priyakumar, S Ramakrishna, KR Nagarjuna, S Karunakar Reddy

The Journal of Physical Chemistry B, 114 , 1707–1718 (2010)

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2009

266.

Electronic structure based study of furan derived peptides Journal Article

Harjinder Singh

N. V. Suresh Kumar,Harjinder Singh,Tushar K Chakraborty

International Symposium, " Of Molecules and Materials (A Survey of Recent Concepts)" (OMAM 2009, 115-120 (2009)

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267.

Electronic structure and properties based study of furan and tetrahydrofuran derived peptides Journal Article

Harjinder Singh

N. V. Suresh Kumar, Harjinder Singh,Tushar K Chakraborty

Changing Paradigms in Theoretical & Computational Chemistry from atoms to molecular clusters , 10 (2009)

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268.

QUANTUM OPTIMAL CONTROL OF NUCLEAR MOTION AND PHOTODISSOCIATION USING GENETIC ALGORITHM Journal Article

Harjinder Singh

Sitansh Sharma,Harjinder Singh,Gabriel G Balint-Kurti

Changing Paradigms of Theoretical and Computational Chemistry: From Atoms to Molecular Clusters, 13 (2009)

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269.

Urea destabilizes RNA by forming stacking interactions and multiple hydrogen bonds with nucleic acid bases Journal Article

U. Deva Priyakumar

U. Deva Priyakumar, Changbong Hyeon, D Thirumalai, Alexander D MacKerell Jr

Journal of the American Chemical Society, 131 , 17759–17761 (2009)

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270.

Quantum chemical study of control of stereochemistry of tetrahdyrofuran ring in tripeptides containing tetrahydrofuran amino acids Journal Article

U. Deva Priyakumar

N. V. Suresh Kumar,U. Deva Priyakumar,Harjinder Singh,Tushar Kanti Chakraborty

International Conference on Physics Biology Interface, 9 (2009)

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271.

Quantum dynamics and optimal control of nuclear motion in the hydrogen bonds of adenine-thymine DNA base pair Journal Article

Harjinder Singh

Sitansh Sharma,Harjinder Singh,Gabriel G Balint-Kurti

nternational Conference on Physics Biology Interface , 11 (2009)

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272.

Molecular Insights into the Switching Mechanism of add A-Riboswitch Journal Article

Abhijit Mitra

Abhijit Mitra

International Conference on Physics Biology Interface, 11 (2009)

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273.

Graph theoretic approach for studying correlated motions in biomolecules Journal Article

Abhijit Mitra

Eshita Mutt, Monika Sharma, Abhijit Mitra, Jyothish Soman, Kothapalli Kishore, Naveena Yanamala

World Congress on Nature & Biologically Inspired Computing (NaBIC), 9-11 (2009)

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274.

Identifying structural repeats in proteins using graph centrality measures Journal Article

Nita Parekh

Ruchi Jain, Hari Krishna Yalamanchili, Nita Parekh

World Congress on Nature & Biologically Inspired Computing (NaBIC), 317 , 1-25 (2009)

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275.

MD simulations of ligand-bound and ligand-free aptamer: molecular level insights into the binding and switching mechanism of the add A-riboswitch Journal Article

Abhijit Mitra

Monika Sharma, Gopalakrishnan Bulusu, Abhijit Mitra

RNA, 15 , 1673-1692 (2009)

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276.

Preferential cyclization in tetrahydrofuran amino acids. Journal Article

Harjinder Singh

N. V. Suresh Kumar,Purshotam Sharma,Tushar Kanti Chakraborty,Harjinder Singh

5th Singapore India Colloborative and Cooperative Chemistry Symposium (SLNCCC-5), Hyderabad, 1-10 (2009)

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277.

Application of Optimal Control Theory to Control Nuclear Motion in Molecules Journal Article

Harjinder Singh

Harjinder singh

Invited Talk: Discussion Meeting on Theoretical Chemistry, SSCU, IISc Centenary Conference Bangalore,, 1-11 (2009)

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278.

Computational techniques in the study of dynamics of natural systems Journal Article

Harjinder Singh

Suvendu Giri,Harjinder Singh

nvited talk: Proceedings of the UGC, DST and CFSL sponsored seminar on computer application for the 21st century: SYNERGIES and VISTAS, 22-40 (2009)

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279.

Design of laser pulses for selective vibrational excitation of the N6-H bond of adenine and adenine-thymine base pair using optimal control theory Journal Article

Harjinder Singh

Sitansh Sharma,Purshotam Sharma,Harjinder Singh,Gabriel Balint-Kurti

Journal of Molecular Modeling,, 15 , 623-631 (2009)

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280.

Some theoretical insights into preferential mode of cyclization in tetrahydrofuran amino acids Journal Article

Harjinder Singh

N. V. Suresh Kumar,Purshotam Sharma,Tushar Kanti Chakraborty,Harjinder Singh

Discussion meeting on Theoretical Chemistry (TCS-2009), Bangalore,, 18-22 (2009)

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281.

Optimal laser pulses for controlling molecular processes Journal Article

Harjinder Singh

Sitansh Sharma,Purshotam Sharma,Harjinder Singh,Gabriel Balint-Kurti

5th Singapore India Colloborative and Cooperative Chemistry Symposium (Slnccc-5), Hyderabad, 1-10 (2009)

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282.

Design of optimal laser pulses to control molecular motion Journal Article

Harjinder Singh

Sitansh Sharma,Purshotam Sharma,Harjinder Singh,Gabriel Balint-Kurti

Discussion Meeting on Theoretical Chemistry, SSCU, IISc Centenary Conference, Bangalore,, 1-9 (2009)

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283.

Preferential mode of cyclization of tetrahydrofuran amino acids containing peptides: some theoretical insights Journal Article

Harjinder Singh

N. V. Suresh Kumar,Purshotam Sharma,Harjinder Singh,Dipankar Koley,Saumya Roy,Tushar Kanti Chakraborty

J. Phys. Org. Chem., 1-20 (2009)

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284.

Electronic Structure studies on base pairing interactions in Nucleic Acids Journal Article

Harjinder Singh

Purshotam Sharma,Sitansh Sharma,Harjinder Singh,Abhijit Mitra

5th Singapore India Colloborative and Cooperative Chemistry Symposium (SLNCCC-5), Hyderabad, , 1-5 (2009)

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285.

Electronic Structure Studies of Interactions in Novel Nucleic Acid Systems: Functional RNA and Size Expanded DNA Journal Article

Harjinder Singh

Purshotam Sharma,Sitansh Sharma,Harjinder Singh,Abhijit Mitra

Discussion meeting on Theoretical Chemistry (TCS-2009), Bangalore, 1-9 (2009)

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286.

Method for Preparing Carbon Supported Pt− Ru Nanoparticles with Controlled Internal Structure Journal Article

Tapan Kumar Sau

Tapan Kumar Sau, Marco Lopez, Dan V Goia

Chemistry of Materials, 21 , 3649–3654 (2009)

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287.

A Theoretical Study on Interaction of Small Gold Clusters Aun (n = 4, 6, 8) with xDNA Base Pairs Journal Article

Harjinder Singh

Purshotam Sharma, Sitansh Sharma, Abhijit Mitra, Harjinder Singh

Journal of Biomolecular Structure and Dynamics, 27 , 65-81 (2009)

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288.

Raman scattering from single gold nanostars Journal Article

Tapan Kumar Sau

Calin Hrelescu, Tapan Kumar Sau, Andrey Rogach, Frank Jaeckel, Jochen Feldmann

U.S. Department of Energy Office of Scientific and Technical Information, 1-2 (2009)

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289.

Controlling loading and optical properties of gold nanoparticles on liposome membranes Journal Article

Tapan Kumar Sau

Tapan Kumar Sau, Alexander S Urban, Srujan K Dondapati, Michael Fedoruk, Margaret R Horton, Andrey L Rogach, Fernando D Stefani, Joachim O Rädler, Jochen Feldmann

Colloids and Surfaces A: Physicochemical and Engineering Aspects, 342 , 92-96 (2009)

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290.

Molecular Modeling of Base Flipping in DNA Journal Article

U. Deva Priyakumar

U Deva Priyakumar, Alexander D MacKerell Jr

DNA and RNA Modification Enzymes, 1-51 (2009)

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291.

A Theoretical Study on Interaction of Small Gold Clusters Aun (n = 4, 6, 8) with xDNA Base Pairs Journal Article

Harjinder Singh

Purshotam Sharma,Sitansh Sharma,Abhijit Mitra,Harjinder Singh

Journal of Biomolecular Structure and Dynamics,, 27 , 65-85 (2009)

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292.

A Theoretical Study on Interaction of Small Gold Clusters Aun (n = 4, 6, 8) with xDNA Base Pairs Journal Article

Harjinder Singh

Purshotam Sharma,Sitansh Sharma,Abhijit Mitra,Harjinder Singh

Journal of Biomolecular Structure and Dynamics,, 27 , 65-85 (2009)

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293.

Modeling the noncovalent interactions at the metabolite binding site in purine riboswitches Journal Article

Abhijit Mitra

Purshotam Sharma, Sitansh Sharma, Mohit Chawla, Abhijit Mitra

Journal of molecular modeling, 15 , 633–649( (2009)

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294.

Graph spectral approach for identifying protein domains Conference

Nita Parekh

Hari Krishna Yalamanchili, Nita Parekh

International Conference on Bioinformatics and Computational Biology (2009).

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295.

An experiment on introducing human values courses in undergraduate curriculum of engineering education Journal Article

Abhijit Mitra

Ramancharla Pradeep Kumar, Rajeev Sangal, Abhijit Mitra, Navjyoti Singh, Kamalkar Karalapalem

Hyderabad: IIIT, (2009)

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296.

Trans Hoogsteen/sugar edge base pairing in RNA. Structures, energies, and stabilities from quantum chemical calculations Journal Article

Abhijit Mitra

Arnost Mladek, Purshotam Sharma, Abhijit Mitra, Dhananjay Bhattacharyya, Jiří Šponer, Judit E Šponer

The Journal of Physical Chemistry B, 113 , 12 (2009)

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297.

Comparative modeling of thioredoxin glutathione reductase from Schistosoma mansoni: a multifunctional target for antischistosomal therapy Journal Article

Abhijit Mitra

Monika Sharma, Smriti Khanna, Gopalakrishnan Bulusu, Abhijit Mitra

Journal of Molecular Graphics and Modelling, 27 , 10 (2009)

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298.

Molecular dynamics investigations for understanding protein folding mechanism of a small two-helix protein Journal Article

Harjinder singh

Monika Sharma,Harjinder Singh,Abhijit Mitra

Discussion Meeting on Theoretical Chemistry , 18-22 (2009)

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2008

299.

Molecular Dynamics Studies to Investigate Thermostability of Mutant Lipases Journal Article

Harjinder Singh

Harjinder Singh

Bioconvene 2007, International conference on Bioinformatics and Drug Discovery, 20-40 (2008)

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300.

Structure Simulation of Pentapeptide with Real valued Genetic Algorithm Journal Article

Harjinder Singh

Madhu Smitha,Abhijit Mitra,Harjinder Singh,Kamalakar Karlapalem

BioConvene 2007, International conference on Bioinformatics and Drug Discovery,, 1-20 (2008)

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347 entries « 6 of 7 »