Publications

345 entries « 2 of 7 »

2019

51.

Identifying Biomarkers for Diffuse Large B-Cell Lymphoma Subtypes Journal Article

Nita Parekh

Prashanthi Dharanipragada, Nita Parekh

Novel Approaches in Cancer Study, 2 , 637-773 (2019)

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52.

Controlled intramolecular H-transfer in Malonaldehyde in the electronic ground state mediated through the conical intersection of 1nπ* and 1ππ* excited electronic states Journal Article

Harjinder Singh

K. R. Nandipati,Arun Kumar Kanakati,Harjinder Singh, Susanta Mahapatra

Physical Chemistry Chemical Physics, 21 , 20018-20030 (2019)

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53.

Comparative Study Of The Efficiency Of Au, Ag, Pd And Pt Based Mono And Bimetallic Trimer Clusters For The CO Oxidation Reaction Journal Article

U. Deva Priyakumar

Saumya Gurtu,Sandhya Rai, U. Deva Priyakumar

Indian chemical society, 96 , 921-931 (2019)

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54.

Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images using deep learning Journal Article

Vinod PK

Sairam Tabibu, Vinod PK, CV Jawahar

Scientific reports, 9 , 9 (2019)

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55.

Cholic Acid-Derived Amphiphile which Combats Gram-Positive Bacteria-Mediated Infections via Disintegration of Lipid Clusters Journal Article

U. Deva Priyakumar

Sandeep Kumar, Jyoti Thakur, Kavita Yadav, Madhurima Mitra, Sanjay Pal, Arjun Ray, Siddhi Gupta, Nihal Medatwal, Ragini Gupta, Deepakkumar Mishra, Parul Rani, Siladitya Padhi, Priyanka Sharma, Arti Kapil, Aasheesh Srivastava, U Deva Priyakumar, Ujjaini Dasgupta, Lipi Thukral, Avinash Bajaj

ACS Biomaterials Science & Engineering, 5 , 4764–4775 (2019)

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56.

Comparative study of the efficiency of Au, Ag, Pd and Pt based mono and bimetallic trimer clusters for the CO oxidation reaction Journal Article

U. Deva Priyakumar

Saumya Gurtu, Sandhya Rai, U Deva Priyakumar

JOURNAL OF THE INDIAN CHEMICAL SOCIETY, 96 , 10 (2019)

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57.

NAPS update: network analysis of molecular dynamics data and protein–nucleic acid complexes Journal Article

Nita Parekh

Broto Chakrabarty, Varun Naganathan, Kanak Garg, Yash Agarwal, Nita Parekh

Nucleic acids research, 47 , W462–W470 (2019)

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58.

Utilization of sidewall plugs for enhancing rock characterization Journal Article

Abhijit Mitra

R. Patterson and M. Aldin S. Govindarajan, D. Gokaraju, Abhijit Mitra, A. Thombare, A. Guedez, T. Ghoneim

One petro, 2019-2103 (2019)

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59.

Energetic, structural and dynamic properties of nucleobase-urea interactions that aid in urea assisted RNA unfolding Journal Article

U. Deva Priyakumar

Tanashree Jaganade, Aditya Chattopadhyay, Nila M Pazhayam, U Deva Priyakumar

Scientific reports, 9 , 12 (2019)

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60.

Single-cell transcriptomic analysis of pancreatic islets in health and type 2 diabetes Journal Article

Vinod PK

Shubham Kumar, Vinod PK

International Journal of Advances in Engineering Sciences and Applied Mathematics, 11 , 105–118 (2019)

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61.

Gold‐Palladium Nanocluster Catalysts for Homocoupling: Electronic Structure and Interface Dynamics Journal Article

U. Deva Priyakumar

Masahiro Ehara, U Deva Priyakumar

The Chemical Record, 19 , 947-959 (2019)

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62.

Meta-analysis of drought-tolerant genotypes in Oryza sativa: A network-based approach Journal Article

Nita Parekh

Sanchari Sircar, Nita Parekh

PloS one, 14 , e0216068 (2019)

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63.

Classical Racemization of Tetrahedral Tetracoordinate Centers via a Planar Transition State or an Intermediate Structure Journal Article

U. Deva Priyakumar

Shampa Raghunathan, Komal Yadav, VC Rojisha, Tanashree Jaganade, V Prathyusha, Swetha Bikkina, Upakarasamy Lourderaj, U Deva Priya Kumar

ChemRxiv, 7114-3955 (2019)

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64.

Computational modeling of the catalytic mechanism of hydroxymethylbilane synthase Journal Article

U. Deva Priyakumar

Navneet Bung, Arijit Roy, U Deva Priyakumar, Gopalakrishnan Bulusu

Physical Chemistry Chemical Physics, 21 , 7932-7940 (2019)

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65.

R D ( * ) motivated S 1 leptoquark scenarios: Impact of interference on the exclusion limits from LHC data Journal Article

Subhadip Mitra

Tanumoy Mandal, Subhadip Mitra, Swapnil Raz

Physical Review D, 99 , 055028 (2019)

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66.

Atypical flexibility in dynamic functional connectivity quantifies the severity in autism spectrum disorder Journal Article

Vinod PK

Vatika Harlalka, Raju S Bapi, PK Vinod, Dipanjan Roy

Frontiers in human neuroscience, 13 , 6 (2019)

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67.

Sol-gel synthesis and characterizations of morphology-controlled Co3O4 particles Journal Article

Tapan Kumar Sau

Ramakrishna Itteboina, Tapan Kumar sau

Materials Today: Proceedings, 9 , 458-467 (2019)

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68.

A deep learning approach for Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images Journal Article

Vinod PK

Sairam Tabibu, Vinod PK, CV Jawahar

bioRxiv, 12 , 559401 (2019)

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2018

69.

Role of Cations in Adsorption of Supercritical Carbon Dioxide at Smectite Mineral–Water Interfaces: Molecular Dynamics and Adaptive Biasing Force Simulation Studies Journal Article

Marimuthu Krishnan

Mohan Maruthi Sena, Marimuthu Krishnan

The Journal of Physical Chemistry C, 123 , 1170–1184 (2018)

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70.

SeqVItA: Sequence Variant Identification and Annotation Platform for Next Generation Sequencing Data Journal Article

Nita Parekh

Prashanthi Dharanipragada, Sampreeth Reddy Seelam, Nita Parekh

Frontiers in Genetics, 9 , 537 (2018)

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71.

Quantum mechanical investigation of the nature of nucleobase-urea stacking interaction, a crucial driving force in RNA unfolding in aqueous urea Journal Article

U. Deva Priyakumar

Nitish Alodia, Tanashree Jaganade, U Deva Priyakumar

Journal of Chemical Sciences, 130 , 15 (2018)

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72.

Determination of Critical Micelle Concentration of Surfactant Using RF Sensing Journal Article

Tapan Kumar Sau

Annesha Mazumder, Arunangshu Biswas, Tapan Kumar Sau, P Porwal, Azeemuddin Syed, Prabhakar Bhimalapuram

IEEE SENSORS, 11 , 18329549 (2018)

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73.

Molecular dynamics simulation of polymer-coupled ion transport in the crystalline polymer electrolyte poly (ethylene oxide) 3: NaI Journal Article

Marimuthu Krishnan

Ramesh Cheerla, Marimuthu Krishnan

Polymer, 155 , 136-145 (2018)

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74.

Plant Metabolomics: An Emerging Technology for Crop Improvement Journal Article

Harjinder Singh

Kapil Sharma, Supriya Sarma, Abhishek Bohra, Abhijit Mitra, Naveen K. Sharma, Anirudh Kumar

New Visions in Plant Science, 4 , 14 (2018)

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75.

Protocol for Coexpression Network Construction and Stress-Responsive Expression Analysis in Brachypodium Journal Article

Nita Parekh

Sanchari Sircar, Nita Parekh, Gaurav Sablok

Brachypodium Genomics, 1667 , 203-221 (2018)

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76.

The top threshold effect in the γ γ production at the LHC Journal Article

Subhadip Mitra

Shashikant R. Dugad, Pankaj Jain, Subhadip Mitra, Prasenjit Sanyal, Ravindra K. Verma

European Physical Journal C, 78 (715), 7 (2018)

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77.

Machine learning models to predict the progression from early to late stages of papillary renal cell carcinoma Journal Article

Vinod PK

Noor Pratap Singh, Raju S Bapi, Vinod PK

Computers in biology and medicine, 100 , 7 (2018)

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78.

Age, Disease, and Their Interaction Effects on Intrinsic Connectivity of Children and Adolescents in Autism Spectrum Disorder Using Functional Connectomics Journal Article

Vinod PK

Noor Pratap Singh, Raju S Bapi, Vinod PK

Brain connectivity, 8 , 12 (2018)

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79.

Consequences of Mg2+ binding on the geometry and stability of RNA base pairs Journal Article

Abhijit Mitra

Antarip Halder, Rohit Roy, Dhananjay Bhattacharyya, Abhijit Mitra

Physical Chemistry Chemical Physics, 20 , 14 (2018)

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80.

Mathematical modelling of reversible transition between quiescence and proliferation Journal Article

Vinod PK

Nishtha Pandey, Vinod PK

PloS one, 13 , 15 (2018)

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81.

A probabilistic framework for constructing temporal relations in replica exchange molecular trajectories Journal Article

U. Deva Priyakumar

Aditya Chattopadhyay, Min Zheng, Mark P Waller, U Deva Priyakumar

Journal of chemical theory and computation, 14 , 3365–3380 (2018)

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82.

Integrative analysis of hippocampus gene expression profiles identifies network alterations in ageing and Alzheimer’s disease Journal Article

Vinod PK

Vinay Lanke, STR Moolamalla, Dipanjan Roy, Vinod PK

Frontiers in aging neuroscience, 10 , 153 (2018)

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83.

Model molecules to classify CH⋯ O hydrogen-bonds Journal Article

U. Deva Priyakumar

Amol M Vibhute, U Deva Priyakumar, Arthi Ravi, Kana M Sureshan

Chemical Communications, 54 , 4629-4632 (2018)

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84.

Systems-level feedback regulation of cell cycle transitions in Ostreococcus tauri Journal Article

Vinod PK

Orsolya Kapuy, Vinod PK, Gábor Bánhegyi, Béla Novák

Plant physiology and biochemistry, 126 , 39-46 (2018)

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85.

iCopyDAV: Integrated Platform for Copy Number Variations - Detection, Annotation and Visualization Journal Article

Nita Parekh

Prashanthi Dharanipragada,Sriharsha Vogeti,Nita Parekh

PLoS ONE, 13 (4), e0195334 (2018)

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86.

Molecular mechanism of melting of a helical polymer crystal: Role of conformational order, packing and mobility of polymers Journal Article

Marimuthu Krishnan

Ramesh Cheerla, Marimuthu Krishnan

Chemical Physics, 502 , 50-59 (2018)

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87.

Molecular Mechanism, Dynamics, and Energetics of Protein-mediated Dinucleotide Flipping in a Mismatched DNA: A Computational Study of RAD4-DNA Complex Journal Article

Marimuthu Krishnan

Kartheek Pitta, Marimuthu Krishnan

Journal of Chemical Information and Modeling, 58 , 647–660 (2018)

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88.

Efficient One-Pot Synthesis and pH-Dependent Tuning of Photoluminescence and Stability of Au18(SC2H4CO2H)14 Cluster Journal Article

Tapan Kumar Sau

Ramakrishna Itteboina, U Divya Madhuri, Partha Ghosal, Monica Kannan, Tapan Kumar Sau, Tatsuya Tsukuda, Shweta Bhardwaj

The Journal of Physical Chemistry A, 122 , 228–1234 (2018)

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89.

Computational modelling of meiotic entry and commitment Journal Article

Vinod PK

Tanvi Bhola, Orsolya Kapuy, Vinod PK

Scientific reports, 8 , 11 (2018)

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90.

Sharing of phosphatases promotes response plasticity in phosphorylation cascades Journal Article

Bhaswar Ghosh

Bhaswar Ghosh , Sarma U, Sourjik V and Legewie S

Biophysical Journal , 114 , 223-236. (2018)

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91.

Metal Nanoparticles in Nanomedicine: Advantages and Scope Journal Article

Tapan Kumar Sau

Tapan Kumar Sau, Arunangshu Biswas, Parijat Ray

Metal Nanoparticles: Synthesis and Applications in Pharmaceutical Sciences, 7 , 155-202 (2018)

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92.

Integration and segregation in Autism Spectrum Disorders modulated by age, disease, and interaction: A graph-theoretic study of intrinsic functional connectivity Journal Article

Vinod PK

Vatika Harlalka, Shruti Naik, Raju S Bapi, Vinod PK, Dipanjan Roy

bioRxiv, 10 , 278846 (2018)

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2017

93.

Detection of ferritin concentration from blood sample using RF spiral inductor based cavity Journal Article

Prabhakar Bhimalapuram

Pratik Porwal, Azeemuddin Syed, Prabhakar Bhimalapuram, Tapan Kumar Sau

Asia-Pacific Conference on Microwave, 10 , 39-46 (2017)

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94.

Design of fractal geometry based RF sensor for detection of complex permittivity of unknown sample Journal Article

Prabhakar Bhimalapuram

Pratik Porwal, Azeemuddin Syed, Prabhakar Bhimalapuram, Tapan Kumar Sau

Asia-Pacific Conference on Microwave, 11 , 13-16 (2017)

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95.

pH-mediated gating and formate transport mechanism in the Escherichia coli formate channel Journal Article

U. Deva Priyakumar

Siladitya Padhi, Lekkala Karthik Reddy, U Deva Priyakumar

Molecular Simulation, 43 , 1300-1306 (2017)

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96.

Role of urea–aromatic stacking interactions in stabilizing the aromatic residues of the protein in urea-induced denatured state Journal Article

U. Deva Priyakumar

Siddharth Goyal, Aditya Chattopadhyay, Koushik Kasavajhala, U Deva Priyakumar

Journal of the American Chemical Society, 139 , 4931–14946 (2017)

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97.

Network level analysis of Aging and Alzheimer’s disease Journal Article

Vinod PK

V Lanke, S Moolamalla, Vinod PK

NGBT conference; Oct, 1 , 1-3 (2017)

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98.

Identification of Biomarkers for Stage Prediction in Papillary Renal Cell Carcinoma Journal Article

Vinod PK

Noor Pratap Singh, Raju S Bapi, Vinod PK

Canadian Journal of Biotechnology, 1 , 72 (2017)

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99.

Modeling complex biomolecular systems and processes using molecular mechanics force fields and molecular dynamics simulations Journal Article

U. Deva Priyakumar

SILADITYA Padhi, U Deva Priyakumar

Theoretical and computational advances: From atoms to molecules to materials, 1 , 105-127) (2017)

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100.

How does mg2+ modulate the rna folding mechanism: A case study of the g: Cw: W trans basepair Journal Article

Abhijit Mitra

Antarip Halder, Rohit Roy, Dhananjay Bhattacharyya, Abhijit Mitra

Biophysical journal, 113 , 277-289 (2017)

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345 entries « 2 of 7 »