Publications

326 entries « 2 of 7 »

2019

51.

Sol-gel synthesis and characterizations of morphology-controlled Co3O4 particles Journal Article

Tapan Kumar Sau

Ramakrishna Itteboina, Tapan Kumar sau

Materials Today: Proceedings, 9 , 458-467 (2019)

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52.

A deep learning approach for Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images Journal Article

Vinod PK

Sairam Tabibu, Vinod PK, CV Jawahar

bioRxiv, 12 , 559401 (2019)

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2018

53.

Role of Cations in Adsorption of Supercritical Carbon Dioxide at Smectite Mineral–Water Interfaces: Molecular Dynamics and Adaptive Biasing Force Simulation Studies Journal Article

Marimuthu Krishnan

Mohan Maruthi Sena, Marimuthu Krishnan

The Journal of Physical Chemistry C, 123 , 1170–1184 (2018)

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54.

SeqVItA: Sequence Variant Identification and Annotation Platform for Next Generation Sequencing Data Journal Article

Nita Parekh

Prashanthi Dharanipragada, Sampreeth Reddy Seelam, Nita Parekh

Frontiers in Genetics, 9 , 537 (2018)

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55.

Quantum mechanical investigation of the nature of nucleobase-urea stacking interaction, a crucial driving force in RNA unfolding in aqueous urea Journal Article

U. Deva Priyakumar

Nitish Alodia, Tanashree Jaganade, U Deva Priyakumar

Journal of Chemical Sciences, 130 , 15 (2018)

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56.

Determination of Critical Micelle Concentration of Surfactant Using RF Sensing Journal Article

Tapan Kumar Sau

Annesha Mazumder, Arunangshu Biswas, Tapan Kumar Sau, P Porwal, Azeemuddin Syed, Prabhakar Bhimalapuram

IEEE SENSORS, 11 , 18329549 (2018)

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57.

Molecular dynamics simulation of polymer-coupled ion transport in the crystalline polymer electrolyte poly (ethylene oxide) 3: NaI Journal Article

Marimuthu Krishnan

Ramesh Cheerla, Marimuthu Krishnan

Polymer, 155 , 136-145 (2018)

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58.

Plant Metabolomics: An Emerging Technology for Crop Improvement Journal Article

Harjinder Singh

Kapil Sharma, Supriya Sarma, Abhishek Bohra, Abhijit Mitra, Naveen K. Sharma, Anirudh Kumar

New Visions in Plant Science, 4 , 14 (2018)

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59.

Protocol for Coexpression Network Construction and Stress-Responsive Expression Analysis in Brachypodium Journal Article

Nita Parekh

Sanchari Sircar, Nita Parekh, Gaurav Sablok

Brachypodium Genomics, 1667 , 203-221 (2018)

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60.

The top threshold effect in the γ γ production at the LHC Journal Article

Subhadip Mitra

Shashikant R. Dugad, Pankaj Jain, Subhadip Mitra, Prasenjit Sanyal, Ravindra K. Verma

European Physical Journal C, 78 (715), 7 (2018)

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61.

Machine learning models to predict the progression from early to late stages of papillary renal cell carcinoma Journal Article

Vinod PK

Noor Pratap Singh, Raju S Bapi, Vinod PK

Computers in biology and medicine, 100 , 7 (2018)

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62.

Age, Disease, and Their Interaction Effects on Intrinsic Connectivity of Children and Adolescents in Autism Spectrum Disorder Using Functional Connectomics Journal Article

Vinod PK

Noor Pratap Singh, Raju S Bapi, Vinod PK

Brain connectivity, 8 , 12 (2018)

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63.

Consequences of Mg2+ binding on the geometry and stability of RNA base pairs Journal Article

Abhijit Mitra

Antarip Halder, Rohit Roy, Dhananjay Bhattacharyya, Abhijit Mitra

Physical Chemistry Chemical Physics, 20 , 14 (2018)

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64.

Mathematical modelling of reversible transition between quiescence and proliferation Journal Article

Vinod PK

Nishtha Pandey, Vinod PK

PloS one, 13 , 15 (2018)

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65.

A probabilistic framework for constructing temporal relations in replica exchange molecular trajectories Journal Article

U. Deva Priyakumar

Aditya Chattopadhyay, Min Zheng, Mark P Waller, U Deva Priyakumar

Journal of chemical theory and computation, 14 , 3365–3380 (2018)

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66.

Integrative analysis of hippocampus gene expression profiles identifies network alterations in ageing and Alzheimer’s disease Journal Article

Vinod PK

Vinay Lanke, STR Moolamalla, Dipanjan Roy, Vinod PK

Frontiers in aging neuroscience, 10 , 153 (2018)

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67.

Model molecules to classify CH⋯ O hydrogen-bonds Journal Article

U. Deva Priyakumar

Amol M Vibhute, U Deva Priyakumar, Arthi Ravi, Kana M Sureshan

Chemical Communications, 54 , 4629-4632 (2018)

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68.

Systems-level feedback regulation of cell cycle transitions in Ostreococcus tauri Journal Article

Vinod PK

Orsolya Kapuy, Vinod PK, Gábor Bánhegyi, Béla Novák

Plant physiology and biochemistry, 126 , 39-46 (2018)

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69.

iCopyDAV: Integrated Platform for Copy Number Variations - Detection, Annotation and Visualization Journal Article

Nita Parekh

Prashanthi Dharanipragada,Sriharsha Vogeti,Nita Parekh

PLoS ONE, 13 (4), e0195334 (2018)

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70.

Molecular mechanism of melting of a helical polymer crystal: Role of conformational order, packing and mobility of polymers Journal Article

Marimuthu Krishnan

Ramesh Cheerla, Marimuthu Krishnan

Chemical Physics, 502 , 50-59 (2018)

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71.

Molecular Mechanism, Dynamics, and Energetics of Protein-mediated Dinucleotide Flipping in a Mismatched DNA: A Computational Study of RAD4-DNA Complex Journal Article

Marimuthu Krishnan

Kartheek Pitta, Marimuthu Krishnan

Journal of Chemical Information and Modeling, 58 , 647–660 (2018)

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72.

Efficient One-Pot Synthesis and pH-Dependent Tuning of Photoluminescence and Stability of Au18(SC2H4CO2H)14 Cluster Journal Article

Tapan Kumar Sau

Ramakrishna Itteboina, U Divya Madhuri, Partha Ghosal, Monica Kannan, Tapan Kumar Sau, Tatsuya Tsukuda, Shweta Bhardwaj

The Journal of Physical Chemistry A, 122 , 228–1234 (2018)

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73.

Computational modelling of meiotic entry and commitment Journal Article

Vinod PK

Tanvi Bhola, Orsolya Kapuy, Vinod PK

Scientific reports, 8 , 11 (2018)

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74.

Sharing of phosphatases promotes response plasticity in phosphorylation cascades Journal Article

Bhaswar Ghosh

Bhaswar Ghosh , Sarma U, Sourjik V and Legewie S

Biophysical Journal , 114 , 223-236. (2018)

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75.

Metal Nanoparticles in Nanomedicine: Advantages and Scope Journal Article

Tapan Kumar Sau

Tapan Kumar Sau, Arunangshu Biswas, Parijat Ray

Metal Nanoparticles: Synthesis and Applications in Pharmaceutical Sciences, 7 , 155-202 (2018)

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76.

Integration and segregation in Autism Spectrum Disorders modulated by age, disease, and interaction: A graph-theoretic study of intrinsic functional connectivity Journal Article

Vinod PK

Vatika Harlalka, Shruti Naik, Raju S Bapi, Vinod PK, Dipanjan Roy

bioRxiv, 10 , 278846 (2018)

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2017

77.

Detection of ferritin concentration from blood sample using RF spiral inductor based cavity Journal Article

Prabhakar Bhimalapuram

Pratik Porwal, Azeemuddin Syed, Prabhakar Bhimalapuram, Tapan Kumar Sau

Asia-Pacific Conference on Microwave, 10 , 39-46 (2017)

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78.

Design of fractal geometry based RF sensor for detection of complex permittivity of unknown sample Journal Article

Prabhakar Bhimalapuram

Pratik Porwal, Azeemuddin Syed, Prabhakar Bhimalapuram, Tapan Kumar Sau

Asia-Pacific Conference on Microwave, 11 , 13-16 (2017)

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79.

pH-mediated gating and formate transport mechanism in the Escherichia coli formate channel Journal Article

U. Deva Priyakumar

Siladitya Padhi, Lekkala Karthik Reddy, U Deva Priyakumar

Molecular Simulation, 43 , 1300-1306 (2017)

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80.

Role of urea–aromatic stacking interactions in stabilizing the aromatic residues of the protein in urea-induced denatured state Journal Article

U. Deva Priyakumar

Siddharth Goyal, Aditya Chattopadhyay, Koushik Kasavajhala, U Deva Priyakumar

Journal of the American Chemical Society, 139 , 4931–14946 (2017)

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81.

Network level analysis of Aging and Alzheimer’s disease Journal Article

Vinod PK

V Lanke, S Moolamalla, Vinod PK

NGBT conference; Oct, 1 , 1-3 (2017)

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82.

Identification of Biomarkers for Stage Prediction in Papillary Renal Cell Carcinoma Journal Article

Vinod PK

Noor Pratap Singh, Raju S Bapi, Vinod PK

Canadian Journal of Biotechnology, 1 , 72 (2017)

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83.

Modeling complex biomolecular systems and processes using molecular mechanics force fields and molecular dynamics simulations Journal Article

U. Deva Priyakumar

SILADITYA Padhi, U Deva Priyakumar

Theoretical and computational advances: From atoms to molecules to materials, 1 , 105-127) (2017)

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84.

How does mg2+ modulate the rna folding mechanism: A case study of the g: Cw: W trans basepair Journal Article

Abhijit Mitra

Antarip Halder, Rohit Roy, Dhananjay Bhattacharyya, Abhijit Mitra

Biophysical journal, 113 , 277-289 (2017)

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85.

Design of RF sensor for simultaneous detection of complex permeability and permittivity of unknown sample Journal Article

Prabhakar Bhimalapuram

Pratik Porwal, Syed Azeemuddin, Prabhakar Bhimalapuram, Tapan Kumar Sau

Progress In Electromagnetics Research, 79 , 159-173 (2017)

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86.

Systems-level organization of non-alcoholic fatty liver disease progression network Journal Article

Vinod PK

K Shubham, L anky Vinay, Vinod PK

Molecular BioSystems, 13 , 1898-1911 (2017)

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87.

Design of RF sensor for simultaneous detection of complex permeability and permittivity of unknown sample Journal Article

Tapan Kumar Sau

Pratik Porwal, Syed Azeemuddin, Prabhakar Bhimalapuram, Tapan Kumar Sau

Progress In Electromagnetics Research, 79 , 159-173 (2017)

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88.

Higher order structures involving post transcriptionally modified nucleobases in RNA Journal Article

Abhijit Mitra

SP Preethi, Purshotam Sharma, Abhijit Mitra

RSC advances, 7 , 35694-35703 (2017)

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89.

THE JOURNAL OF CHEMICAL PHYSICS 146 , 214304 (2017) An alternative laser driven photodissociation mechanism of pyrrole via 1 πσ /S 0 conical intersection Journal Article

Harjinder Singh

Nandipati Krishna Reddy, Zhenzhang Lan,Harjinder Singh, Susanta Mahapatra

THE JOURNAL OF CHEMICAL PHYSICS, 146 (21), 1133-1135 (2017)

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90.

Structural landscape of base pairs containing post-transcriptional modifications in RNA Journal Article

Abhijit Mitra

Preethi P Seelam, Purshotam Sharma, Abhijit Mitra

RNA, 23 , 847-859 (2017)

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91.

Direct Determination of Site-specific Noncovalent Interaction Strengths of Proteins from NMR-derived Fast Side Chain Motional Parameters Journal Article

Marimuthu Krishnan

Rajeshwar Tatikonda Rajitha, Marimuthu Krishnan

Journal of Physical Chemistry B, 121 , 5174–5186 (2017)

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92.

Temperature dependence of the stability of ion pair interactions, and its implications on the thermostability of proteins from thermophiles Journal Article

U. Deva Priyakumar

Swetha Bikkina, Agastya P Bhati, Siladitya Padhi, U Deva Priyakumar

Journal of Chemical Sciences, 129 , 405-414 (2017)

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93.

Initial state-specific photodissociation dynamics of pyrrole via 1πσ∗/S0 conical intersection initiated with optimally controlled UV-laser pulses Journal Article

Harjinder Singh

K. R. Nandipati,Arun Kumar Kanakati,Harjinder Singh,Z. Lan, Susanta Mahapatra

THE EUROPEAN PHYSICAL JOURNAL D, 71 (222), 336-339 (2017)

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94.

Controlling Nuclear and Electronic Motion in Molecules Journal Article

Harjinder Singh

Harjinder singh

Proceedings of Theory Conference on "Ten Years of Excellence in Science: 2006 - 2016, 5 , 20-30 (2017)

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95.

Reverse Watson-Crick purine-purine base pairs—the Sharp-turn motif and other structural consequences in functional RNAs Journal Article

Abhijit Mitra

Abhinav Mittal, Antarip Halder, Sohini Bhattacharya, Dhananjay Bhattacharyya, Abhijit Mitra

bioRxiv, 098723 (2017)

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96.

Microsecond simulation of human aquaporin 2 reveals structural determinants of water permeability and selectivity Journal Article

U. Deva Priyakumar

Siladitya Padhi, U Deva Priyakumar

Biochimica et Biophysica Acta (BBA)-Biomembranes, 1859 , 10-16 (2017)

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2016

97.

Detection of biotin-streptavidin interaction using RF interdigitated capacitive cavity Journal Article

Tapan Kumar Sau

Pratik Porwal, Azeemuddin Syed, Prabhakar Bhimalapuram, Tapan Kumar Sau

IEEE MTT-S International Microwave and RF Conference, 18 , 2377-9152 (2016)

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98.

Detection of biotin-streptavidin interaction using RF interdigitated capacitive cavity Journal Article

Tapan Kumar Sau

Pratik Porwal, Azeemuddin Syed, Prabhakar Bhimalapuram, Tapan Kumar Sau

IEEE MTT-S International Microwave and RF Conference, 18 , 2377-9152 (2016)

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99.

Urea mimics nucleobases by preserving the helical integrity of B-DNA duplexes via hydrogen bonding and stacking interactions Journal Article

U. Deva Priyakumar

Gorle Suresh, Siladitya Padhi, Indrajit Patil, U Deva Priyakumar

Biochemistry, 55 , 5653–5664 (2016)

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100.

Urea–aromatic stacking and concerted urea transport: conserved mechanisms in urea transporters revealed by molecular dynamics Journal Article

U. Deva Priyakumar

Siladitya Padhi, U Deva Priyakumar

Journal of chemical theory and computation, 12 , 5190-5200 (2016)

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326 entries « 2 of 7 »