Publications

345 entries « 7 of 7 »

2008

301.

Real Valued Genetic Algorithm Based Approach for Protein Structure Prediction - Role of Biophysical Filters for reduction of Conformational Search Space Journal Article

Harjinder Singh

Madhu Smitha,Abhijit Mitra,Harjinder Singh

Third IAPR International Conference on Pattern Recognition in Bioinformatics PRIB, 1-9 (2008)

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302.

A real valued Genetic Algorithm for generating native like structure of small globular protein Journal Article

Harjinder Singh

Harjinder Singh, Kamalakar Karlapalem, Abhijit Mitra

Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 1-4 (2008)

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303.

Graph Spectral Analysis of Protein Repeat Families Journal Article

Nita Parekh

Nita parekh

Recent Developments and Applications of Probability Theory, Random Process and Random Variables in Computer Science, 215-222 (2008)

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304.

Optimal Control Theory and the design of Laser pulses to control molecular motion Journal Article

Harjinder singh

Gabriel Balint-Kurti,Qinghua Ren,Cristina Sanz,Shiyang Zou,Harjinder Singh,Sitansh Sharma,Praveen Kumar,Thomas Herrmann,Jeremy N Harvey,Frederick R Manby

Computational Molecular Science, 1-15 (2008)

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305.

Noncanonical Base Pairing in RNA: Topological and NBO Analysis of Hoogsteen Edge-Sugar Edge Interactions Journal Article

Harjinder Singh

Purshotam Sharma, Harjinder Singh, Abhijit Mitra

Computational Science, 379-386 (2008)

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306.

Design of Optimal Laser fields to control vibrational excitations in Carboxy-myoglobin Journal Article

Harjinder Singh

Harjinder Singh,Sitansh Sharma,Jeremy N Harvey,Praveen Kumar,Gabriel G Balint-Kurti

Proceedings of International Conference of Computer Science, 1-10 (2008)

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307.

State of the art quantum chemical calculations of structures and properties of medium sized molecular systems Journal Article

Harjinder Singh

Harjinder Singh

Proceedings of the National Symposim on "Modern Trends in Chemistry: Molecules to Materials", 1-15 (2008)

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308.

Variation of conformational propensity of different amino acids within disallowed and allowed regions of the Ramachandran Plot Journal Article

Harjinder Singh

Madhu Smitha,Harjinder Singh,Abhijit Mitra

International Conference on Bioinformatics and Drug Discovery, Bioconvene , 1-9 (2008)

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309.

A Real Valued Genetic Algorithm for Generating Native Like Structure of Small Globular Protein Journal Article

Harjinder Singh

Madhu Smitha,Harjinder Singh,Kamalakar Karlapalem,Abhijit Mitra

EEE EMBC'08, 30th Annual International Conference of the IEEE Engineering in Medicine and Biology, 1-5 (2008)

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310.

Optimally Controlled Vibrational Population Transfer in a Diatomic Quantum System Journal Article

Harjinder Singh

Praveen Kumar,Sitansh Sharma,Harjinder Singh

Journal of Theoretical and Computational Chemistry, 5 , 1-9 (2008)

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311.

Design of Optimal Laser Fields to Control Molecular Vibrational Excitations Journal Article

Harjinder Singh

Harjinder Singh,Sitansh Sharma,Praveen Kumar,Jeremy N Harvey,Gabriel G Balint-Kurti

Presented at CMS, 1-11 (2008)

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312.

Electronic structure studies of DNA-nanoclusters Journal Article

Harjinder Singh

Himanshu singh,Purshotam Sharma,Harjinder Singh

Proceedings of the National Biennial Conference of Nanosciences and Nanotechnology, 1-5 (2008)

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313.

Quantum chemical studies of structures and binding in noncanonical RNA base pairs: the trans Watson-Crick: Watson-Crick family Journal Article

Harjinder Singh

Purshotam Sharma, Abhijit Mitra, Sitansh Sharma, Harjinder Singh, Dhananjay Bhattacharyya

Journal of Biomolecular Structure and Dynamics, 25 , 709-732 | (2008)

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314.

Vibrational control of molecular systems in simple and complex environments Journal Article

Harjinder Singh

Harjinder Singh

Proceedings of the National Symposium on "The Electronic Structure and Properties of Atoms and Molecules, 1-9 (2008)

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315.

Interaction of size expanded DNA bases with small neutral gold nanoclusters Journal Article

Harjinder Singh

Purshotam Sharma, Sitansh Sharma, Harjinder Singh, Abhijit Mitra

IEEE International Nanoelectronics Conference, 1-3 (2008)

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316.

Interaction of size expanded DNA bases with small neutral gold nano clusters Journal Article

Harjinder Singh

Purshotam Sharma,Sitansh Sharma,Harjinder Singh,Abhijit Mitra

Presented at 2nd IEEE International Nanoelectronics Conference, Shanghai, China, 1-20 (2008)

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317.

Positive feedback and noise activate the stringent response regulator Rel in mycobacteria Journal Article

Bhaswar Ghosh

Sureka K, Bhaswar Ghosh,Dasgupta A, Basu J, Kundu M and Bose I

PLoS One, 3 , e1771 (2008)

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318.

How the nature of an observation affects single-trajectory entropies Journal Article

Prabhakar Bhimalapuram

Ying Li, Tong Zhao, Prabhakar Bhimalapuram, Aaron R Dinner

The Journal of chemical physics, 128 , 074102 (2008)

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319.

Atomic Detail Investigation of the Structure and Dynamics of DNA• RNA Hybrids: A Molecular Dynamics Study Journal Article

U. Deva Priyakumar

U Deva Priyakumar, Alexander D MacKerell

The Journal of Physical Chemistry B, 112 , 1515–1524 (2008)

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320.

Base pairing in RNA structures: A computational analysis of structural aspects and interaction energies Journal Article

Harjinder Singh

Purshotam Sharma, Abhijit Mitra, Sitansh Sharma, Harjinder Singh

Journal of Chemical Sciences, 119 (6), 1-9 (2008)

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2007

321.

Preferential cyclotrimerization of 5-(aminomethyl)-2-furancarboxylic acid (AMFC): Electrostatic and orbital interaction studies Journal Article

Harjinder Singh

Monika Sharma,Praveen Kumar,Harjinder Singh,Tushar K Chakraborty

Journal of Molecular Structure: THEOCHEM, 764 , 109-115 (2007)

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322.

Binding of gold Nanoclusters with size-expanded DNA bases: A computational study of structural and electronic properties Journal Article

Harjinder Singh

Purshotam Sharma,Himanshu singh,Sitansh Sharma,Harjinder Singh

J.Chem. Theory Comput., 3 , 2301-3-2311 (2007)

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323.

Controlling dynamics in diatomic systems Journal Article

Harjinder Singh

Praveen Kumar,Harjinder Singh

J. Chem. Sci., 119 , 3-9 (2007)

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324.

Quantum control of vibrational excitations in a heteronucler diatomic molecule Journal Article

Harjinder Singh

Sitansh Sharma,Purshotam Sharma,Harjinder Singh

J. Chem. Sci, 119 , 433440. (2007)

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325.

Base pairing in RNA structures: A computational analysis of structural aspects and interaction energies Journal Article

Abhijit Mitra

Purshotam Sharma, Abhijit Mitra, Sitansh Sharma, Harjinder Singh

Journal of Chemical Sciences, 119 , 1-6 (2007)

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326.

The p53-MDM2 network: from oscillations to apoptosis Journal Article

Bhaswar Ghosh

Indrani Bose , Bhaswar Ghosh

Journal of Bioscience, 32 , 991-997 (2007)

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327.

Theoretical analysis of noncanonical base pairing interactions in RNA molecules Journal Article

Abhijit Mitra

Dhananjay Bhattacharyya, Siv Chand Koripella, Abhijit Mitra, Vijay Babu Rajendran, Bhabdyuti Sinha

Journal of biosciences, 32 , 809–825 (2007)

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328.

Enthalpy entropy compensation during thermal degradation Journal Article

Harjinder Singh

Shalini Gaur Rudra,Harjinder Singh,Santanu Basu,U S Shivhare

Journals of Food Engineering, 86 , 379-387 (2007)

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329.

Molecular Dynamics Studies to Investigate Thermostability of Mutants of B.subtilis Lipase Journal Article

Abhijit Mitra

Ramya Cherukupalli,MONIKA SHARMA,N. Madhusudan Rao,Harjinder Singh,Abhijit Mitra

1-7 (2007)

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330.

Molecular Dynamics Studies to Investigate Thermostability of Mutants of B.subtilis Lipase Journal Article

Harjinder Singh

Ramya Cherukupalli,MONIKA SHARMA,N. Madhusudan Rao,Harjinder Singh,Abhijit Mitra

1-5 (2007)

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331.

Quantum Chemical Studies of Structures and binding in Noncanonical RNA Base pairs: The Trans Watson Crick/Watson-Crick family Journal Article

Abhijit Mitra

Abhijit Mitra,Harjinder Singh,Purshotam Sharma,Sitansh Sharma,Dhananjay Bhattacharyya

Journal of Biomolecular Structure and Dynamics, 25 , 1-9 (2007)

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332.

Quantum Chemical Studies of Structures and binding in Noncanonical RNA Base pairs: The Trans Watson Crick/Watson-Crick family Journal Article

Harjinder Singh

Abhijit Mitra,Harjinder Singh,Purshotam Sharma,Sitansh Sharma,Dhananjay Bhattacharyya

Journal of Biomolecular Structure and Dynamics, 25 , 1-9 (2007)

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2006

333.

Gene Copy Number and Cell Cycle Arrest Journal Article

Bhaswar Ghosh

Bhaswar Ghosh and Bose I

Physical Biology, 3 , 29-36 (2006)

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334.

Non-canonical base pairs and higher order structures in nucleic acids: crystal structure database analysis Journal Article

Abhijit Mitra

Jhuma Das, Shayantani Mukherjee, Abhijit Mitra, Dhananjay Bhattacharyya

Journal of Biomolecular Structure and Dynamics, 24 , 1-12 (2006)

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335.

Thermische und photochemische Umwandlungen von Hetero‐1, 3, 5‐hexatrienen in fünfgliedrige Ringe mögliche pericyclische Reaktionen Journal Article

Abhijit Mitra

Manapurathu V George, Abijit Mitra, Kutikat B Sukumaran

Angewandte Chemie, 92 , 1005-1014 (2006)

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2005

336.

Noise Characteristics of feed forward loops Journal Article

Bhaswar Ghosh

Bhaswar Ghosh, Karmakar R and Bose I

Physical Biology, 2 , 36-45 (2005)

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337.

SIGNIFICANCE OF mRNA AND siRNA SECONDARY STRUCTURES ON RNA INTERFERENCE EFFICIENCY Journal Article

Abhijit Mitra

D. Satyanarayana Rao,Abhijit Mitra

National, 1-5 (2005)

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338.

Efficient Algorithms for Range Queries in Protein Sequence Analysis Journal Article

Abhijit Mitra

N Madhusudhanan,Prosenjit Gupta,Abhijit Mitra

International, 2-7 (2005)

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2004

339.

Theoretical Studies of non-WatsonCrick Base Pairs in Double Helical Regions of Different RNA Structures Journal Article

Abhijit Mitra

BHABDYUTI SINHA, Dhananjay Bhattacharyya,Abhijit Mitra

10 (2004)

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340.

IPSVAC – Integrated Platform for Sequence Visualization, Analysis and Comparison Journal Article

Abhijit Mitra

Naveena V K Yanamala,Harikrishna V Rekapalli,Sri Jyothsna Yeleswarapu,Ram Sateesh Talari,Abhijit Mitra

1-5 (2004)

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341.

Motifs in gene transcription regulatory networks Journal Article

Bhaswar Ghosh

Bose I, Bhaswar Ghosh and Karmakar R

Physica A, 346 , 49-57 (2004)

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2003

342.

Controllability of spatiotemporal systems using constant pinnings Journal Article

Nita Parekh

Nita Parekh, Somdatta Sinha

Physica A: Statistical Mechanics and its Applications, 318 , 200-212 (2003)

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0000

343.

Clinico-Genomic analysis reveals mutations associated with COVID-19 disease severity: possible modulation by RNA structure Unpublished

(0000).

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344.

Molecular Representations for Machine Learning Applications in Chemistry Unpublished

U. Deva Priyakumar

Shampa Ragunathan and U. Deva Priyakumar

(0000).

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345.

Staufen-2 functions as a co-factor for enhanced nucleocytoplasmic trafficking of Rev-meditated viral RNA via the CRM1 pathway by making a tripartite complex Unpublished

U. Deva Priyakumar

Kannan Balakrishnan, Punnagi Munusami, Krishnaveni Mohareer, U Deva Priyakumar, Atoshi Banerjee, Tom Luedde, Shekhar C Mande, Carsten Munk, Sharmistha Banerjee

(0000).

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345 entries « 7 of 7 »